Sinogram is a class to reconstruct images from a sinogram. More...

#include <Image.h>

Inheritance diagram for gVirtualXRay::Sinogram< T >:

Collaboration diagram for gVirtualXRay::Sinogram< T >:

Public Member Functions
	Sinogram ()

	Sinogram (const Image< T > anImage)

	Sinogram (unsigned int aWidth, unsigned int aHeight, unsigned int aNumberOfSlices=1)

Image< T >	getProjectionSet () const

Image< T >	art (double aFirstAngle, double anAngleStep, unsigned int aNumberOfIterations=0, const char aDirectory=0, void(aCallback)(const Image< T > , const Image< T > , const Image< T > *)=0) const

Image< T >	mart (double aFirstAngle, double anAngleStep, unsigned int aNumberOfIterations=0, const char aDirectory=0, void(aCallback)(const Image< T > , const Image< T > , const Image< T > *)=0) const

Image< T >	sirt (double aFirstAngle, double anAngleStep, unsigned int aNumberOfIterations=0, const char aDirectory=0, void(aCallback)(const Image< T > , const Image< T > , const Image< T > *)=0) const

Image< T >	simpleBackProjection (double aFirstAngle, double anAngleStep, const char aDirectorye=0, void(aCallback)(const Image< T > , const Image< T > , const Image< T > *)=0) const

Image< T >	filteredBackProjection (double aFirstAngle, double anAngleStep, const char aFilterType="hamming", float aScalingFactor=1.0, const char aDirectory=0, void(aCallback)(const Image< T > , const Image< T > , const Image< T > )=0) const

Image< T >	art (double aFirstAngle, double anAngleStep, unsigned int aNumberOfIterations, const std::string &aDirectory, void(aCallback)(const Image< T > , const Image< T > , const Image< T > )) const

Image< T >	mart (double aFirstAngle, double anAngleStep, unsigned int aNumberOfIterations, const std::string &aDirectory, void(aCallback)(const Image< T > , const Image< T > , const Image< T > )) const

Image< T >	sirt (double aFirstAngle, double anAngleStep, unsigned int aNumberOfIterations, const std::string &aDirectory, void(aCallback)(const Image< T > , const Image< T > , const Image< T > )) const

Image< T >	simpleBackProjection (double aFirstAngle, double anAngleStep, const std::string &aDirectory, void(aCallback)(const Image< T > , const Image< T > , const Image< T > )) const

Image< T >	filteredBackProjection (double aFirstAngle, double anAngleStep, const std::string &aFilterType, float aScalingFactor, const std::string &aDirectory, void(aCallback)(const Image< T > , const Image< T > , const Image< T > )) const

void	makeBlank (const T &aDefaultColour=0)
	Replace all the pixels of an image with a default value. More...

Image	getROI (unsigned int i, unsigned int j, unsigned int k, unsigned int aWidth, unsigned int aHeight, unsigned int aDepth) const
	Compute a region of interest (ROI). More...

void	setPixel (unsigned int i, unsigned int j, unsigned int k, T aValue)
	Set a pixel. More...

T &	getPixel (unsigned int i, unsigned int j, unsigned int k=0)
	Accessor on a pixel value. More...

const T &	getPixel (unsigned int i, unsigned int j, unsigned int k=0) const
	Accessor on a pixel value. More...

T &	getPixelValue (unsigned int i, unsigned int j, unsigned int k=0)
	Accessor on a pixel value. More...

const T &	getPixelValue (unsigned int i, unsigned int j, unsigned int k=0) const
	Accessor on a pixel value. More...

VEC3	getPixelPosition (unsigned int i, unsigned int j, unsigned int k=0) const
	Accessor on a pixel position. More...

T &	operator[] (unsigned anIndex)

const T &	operator[] (unsigned anIndex) const

T &	operator() (unsigned int i, unsigned int j, unsigned int k)

const T &	operator() (unsigned int i, unsigned int j, unsigned int k) const

void	destroy ()
	Release the memory. More...

T *	getRawData ()
	Accessor on the raw data. More...

const T *	getRawData () const
	Accessor on the raw data. More...

unsigned int	getWidth () const
	Number of pixels along the horizontal axis. More...

unsigned int	getHeight () const
	Number of pixels along the vertical axis. More...

unsigned int	getDepth () const
	Number of pixels along the Z axis. More...

void	setSpacing (const VEC3 &aPixelSize)

void	setSpacing (const double &aPixelWidth, const double &aPixelHeight=0.0, const double &aPixelDepth=0.0)

const VEC3 &	getSpacing () const

T	getMinValue () const
	Compute the minimum pixel value in the image. More...

T	getMinValue (unsigned int aSliceID) const
	Compute the minimum pixel value in a given slice. More...

T	getMaxValue () const
	Compute the maximum pixel value in the image. More...

T	getMaxValue (unsigned int aSliceID) const
	Compute the maximum pixel value in a given slice. More...

Image	shiftScaleFilter (double aShiftValue, double aScaleValue, bool aRunOnGPUFlag=true) const

Image< unsigned char >	threshold (const T &aLowerThreshold, const T &aUpperThreshold, unsigned char anInValue, unsigned char anOutValue, bool aRunOnGPUFlag=true) const

Image< unsigned char >	threshold (const T &aThreshold, unsigned char aValueIn=1, unsigned char aValueOut=0) const

Image< unsigned char >	threshold (const T &aLowerThreshold, const T &aUpperThreshold, unsigned char aValueIn=1, unsigned char aValueOut=0) const

Image< T >	convolution1D (const std::vector< float > &aKernel) const

Image< T >	convolution2D (const Image< float > &aKernel) const

Image< T >	convolution2D (const Image< double > &aKernel) const

Image< unsigned char >	opening (unsigned int aRadius) const

Image< unsigned char >	closing (unsigned int aRadius) const

Image< float >	getIsoTropic () const

Image< float >	antiAliasBinaryImageFilter (double aMaximumRMSChange, unsigned int aNumberOfIterations, double aVariance) const

Image	constantPadFilter (const T &aPadValue) const

Image	normalised () const
	Normalise the image between 0 and 1. More...

Image	normalized () const
	Normalize the image between 0 and 1. More...

void	load (const char *aFileName)

void	load (const std::string &aFileName)

void	loadUsingITK (const char *aFileName)

void	loadUsingITK (const std::string &aFileName)

void	loadSeries (const char *aPattern, int aFirstSliceIndex, int aLastSliceIndex, int anIncrementIndex=1)

void	loadSeries (const std::string &aPattern, int aFirstSliceIndex, int aLastSliceIndex, int anIncrementIndex=1)

void	loadDicomSeries (const char *aDirectory)

void	loadDicomSeries (const std::string &aDirectory)

void	loadASCII (const char *aFileName)

void	loadASCII (const std::string &aFileName)

void	loadASCII (const char *aFileName, unsigned int aWidth, unsigned int aHeight, unsigned int aDepth, const VEC3 &aVoxelSize)

void	loadASCII (const std::string &aFileName, unsigned int aWidth, unsigned int aHeight, unsigned int aDepth, const VEC3 &aVoxelSize)

void	loadMHD (const char *aFileName)

void	loadMHD (const std::string &aFileName)

void	loadMHA (const char *aFileName)

void	loadMHA (const std::string &aFileName)

unsigned int	sizeOf (const char *anElementType) const

unsigned int	sizeOf (const std::string &anElementType) const

void	loadRAW (const char aFileName, unsigned int aWidth, unsigned int aHeight, unsigned int aNumberOfSlices=1, bool aChangeEndianessFlag=false, const char anElementType=0)

void	loadRAW (const std::string &aFileName, unsigned int aWidth, unsigned int aHeight, unsigned int aNumberOfSlices=1, bool aChangeEndianessFlag=false, const std::string &anElementType="")

void	save (const char aFileName, bool anInvertLUTFlag=false, const char aComment="", bool useDeflateCompressionIfPossible=false) const
	Save the image in a file. More...

void	save (const std::string &aFileName, bool anInvertLUTFlag=false, const std::string &aComment="", bool useDeflateCompressionIfPossible=false) const
	Save the image in a file. More...

void	savePGM (const char *aFileName) const
	Save the image in a PGM file. More...

void	savePGM (const std::string &aFileName) const
	Save the image in a PGM file. More...

void	saveRaw (const char *aFileName, bool useDeflateCompressionIfPossible) const
	Save the image in a Raw file. More...

void	saveRaw (const std::string &aFileName, bool useDeflateCompressionIfPossible) const
	Save the image in a Raw file. More...

void	saveRAW (const char *aFileName, bool useDeflateCompressionIfPossible) const
	Save the image in a Raw file. More...

void	saveRAW (const std::string &aFileName, bool useDeflateCompressionIfPossible) const
	Save the image in a Raw file. More...

void	saveASCII (const char *aFileName) const
	Save the image in an ASCII file. More...

void	saveASCII (const std::string &aFileName) const
	Save the image in an ASCII file. More...

void	saveMHD (const char *aFileName, bool useDeflateCompressionIfPossible=false) const
	Save the image in a MHD+RAW file. More...

void	saveMHD (const std::string &aFileName, bool useDeflateCompressionIfPossible=false) const
	Save the image in a MHD+RAW file. More...

void	saveMHA (const char *aFileName, bool useDeflateCompressionIfPossible=false) const
	Save the image in a MHA+RAW file. More...

void	saveMHA (const std::string &aFileName, bool useDeflateCompressionIfPossible=false) const
	Save the image in a MHA+RAW file. More...

void	saveDCM (const char aFileName, bool anInvertLUTFlag=false, const char aComment="") const
	Save the image in a DICOM file. More...

void	saveDCM (const std::string &aFileName, bool anInvertLUTFlag=false, const std::string &aComment="") const
	Save the image in a DICOM file. More...

void	saveTIFF (const char *aFileName, bool anInvertLUTFlag=false) const
	Save the image in a TIFF file. More...

void	saveTIFF (const std::string &aFileName, bool anInvertLUTFlag=false) const
	Save the image in a TIFF file. More...

void	saveUsingITK (const char *aFileName, bool useDeflateCompressionIfPossible=false) const
	Save the image in a file using ITK. More...

void	saveUsingITK (const std::string &aFileName, bool useDeflateCompressionIfPossible=false) const
	Save the image in a file using ITK. More...

bool	operator== (const Image< T > &anImage) const
	Operator Equal to. More...

bool	operator!= (const Image< T > &anImage) const
	Operator Not equal to. More...

Image	operator+ (const Image< T > &anImage) const
	Addition operator. Add anImage. More...

Image	operator+ (T aValue) const
	Addition operator. Add aValue to every pixel of the image. More...

Image	operator- (const Image< T > &anImage) const
	Subtraction operator. Add anImage. More...

Image	operator- (T aValue) const
	Subtraction operator. Subtract aValue to every pixel of the image. More...

Image	operator* (const Image< T > &anImage) const
	Multiplication operator. Add anImage. More...

Image	operator* (T aValue) const
	Multiplication operator. Multiply every pixel of the image by aValue. More...

Image	operator/ (const Image< T > &anImage) const
	Division operator. Add anImage. More...

Image	operator/ (T aValue) const
	Division operator. Divide every pixel of the image by aValue. More...

Image< T > &	operator+= (const Image< T > &anImage)
	Addition assignment operator. Add anImage. More...

Image< T > &	operator+= (T aValue)
	Addition operator. Add aValue to every pixel of the image. More...

Image< T > &	operator-= (const Image< T > &anImage)
	Subraction assignment operator. Add anImage. More...

Image< T > &	operator-= (T aValue)
	Subtraction operator. Subtract aValue to every pixel of the image. More...

Image< T > &	operator*= (const Image< T > &anImage)
	Multiplication assignment operator. Add anImage. More...

Image< T > &	operator*= (T aValue)
	Multiplication operator. Multiply every pixel of the image by aValue. More...

Image< T > &	operator/= (const Image< T > &anImage)
	Division assignment operator. Add anImage. More...

Image< T > &	operator/= (T aValue)
	Division operator. Divide every pixel of the image by aValue. More...

Image	operator! () const
	Negation operator. Compute the negative of the current image. More...

Image< T >	abs () const

Image< T >	log () const

Image< T >	flipVertically () const

Image< T >	flipHorizontally () const

double	getSum () const

double	getAverage () const

double	getVariance () const

double	getStandardDeviation () const

double	computeSAE (const Image< T > &anImage) const

double	computeMAE (const Image< T > &anImage) const

double	computeSSE (const Image< T > &anImage) const

double	computeMSE (const Image< T > &anImage) const

double	computeRMSE (const Image< T > &anImage) const

double	computeNCC (const Image< T > &anImage) const

gVirtualXRay::FFT< T >	getFFT () const

Image< T >	transpose () const

Image< T >	resize (unsigned int aNewWidth, unsigned int aNewHeightunsigned, unsigned int aNewNumberOfSlices) const

Image< T >	rotate (float anAngleInDegrees) const

Image< T >	setCanvasSize (unsigned int aNewWidth, unsigned int aNewHeight, unsigned int aNewNumberOfSlices) const

gVirtualXRay::Sinogram< T >	radonTransform (double aFirstAngle, double anAngleStep, double aLastAngle) const

PolygonMesh	marchingCubes (const T &aFirstThresholdValue, const T &aSecondThresholdValue=0, bool aTwoThresholdFlag=false, unsigned char aVerboseLevel=0) const

void	convertVoxelsToCubes (std::map< T, PolygonMesh > &aPolygonMeshSet, T aThreshold=-1000, unsigned char aVerboseLevel=0) const
	Convert every voxel into a cube. More...

Image< T >	convertHU2mu (double anEnergy) const

void	allocateHostMemory ()

void	transferHostToDevice ()

void	transferDeviceToHost ()

void	destroyOpenGLTexture ()

unsigned int	getTextureId () const

Protected Member Functions
VEC3	VertexInterp (const T &aThresholdValue, const VEC3 &p0, const VEC3 &p1, const T &v0, const T &v1) const

Protected Attributes
unsigned int	m_width
	Number of pixel along the horizontal axis. More...

unsigned int	m_height
	Number of pixel along the vertical axis. More...

unsigned int	m_number_of_slices
	Number of slices. More...

VEC3	m_spacing
	The space between two successive pixels. More...

T *	m_p_image
	The pixel data. More...

unsigned int	m_texture_id
	OpenGL texture ID. More...

Static Protected Attributes
static unsigned int	g_mesh_type

static unsigned int	g_vbo_type

Detailed Description

template<typename T>
class gVirtualXRay::Sinogram< T >

Sinogram is a class to reconstruct images from a sinogram.

Definition at line 94 of file Image.h.

Constructor & Destructor Documentation

◆ Sinogram() [1/3]

template<typename T >

gVirtualXRay::Sinogram< T >::Sinogram ( )

Definition at line 80 of file Sinogram.inl.

◆ Sinogram() [2/3]

template<typename T>

gVirtualXRay::Sinogram< T >::Sinogram ( const Image< T > anImage )

Definition at line 85 of file Sinogram.inl.

◆ Sinogram() [3/3]

template<typename T>

gVirtualXRay::Sinogram< T >::Sinogram	(	unsigned int	aWidth,
		unsigned int	aHeight,
		unsigned int	aNumberOfSlices = `1`
	)

Definition at line 90 of file Sinogram.inl.

Member Function Documentation

◆ abs()

template<typename T >

Image< T > gVirtualXRay::Image< T >::abs ( ) const

inherited

Definition at line 2103 of file Image.inl.

◆ allocateHostMemory()

template<typename T>

void gVirtualXRay::Image< T >::allocateHostMemory ( )

inherited

◆ antiAliasBinaryImageFilter()

template<typename T >

Image< float > gVirtualXRay::Image< T >::antiAliasBinaryImageFilter	(	double	aMaximumRMSChange,
		unsigned int	aNumberOfIterations,
		double	aVariance
	)		const

inherited

Definition at line 1857 of file Image.inl.

◆ art() [1/2]

template<typename T>

Image< T > gVirtualXRay::Sinogram< T >::art	(	double	aFirstAngle,
		double	anAngleStep,
		unsigned int	aNumberOfIterations = `0`,
		const char *	aDirectory = `0`,
		void()(const Image< T > , const Image< T > , const Image< T > )	aCallback = `0`
	)		const

Definition at line 123 of file Sinogram.inl.

◆ art() [2/2]

template<typename T>

Image< T > gVirtualXRay::Sinogram< T >::art	(	double	aFirstAngle,
		double	anAngleStep,
		unsigned int	aNumberOfIterations,
		const std::string &	aDirectory,
		void()(const Image< T > , const Image< T > , const Image< T > )	aCallback
	)		const

Definition at line 515 of file Sinogram.inl.

◆ closing()

template<typename T >

Image< unsigned char > gVirtualXRay::Image< T >::closing ( unsigned int aRadius ) const

inherited

Definition at line 1555 of file Image.inl.

◆ computeMAE()

template<typename T>

double gVirtualXRay::Image< T >::computeMAE ( const Image< T > & anImage ) const

inherited

Definition at line 3643 of file Image.inl.

◆ computeMSE()

template<typename T>

double gVirtualXRay::Image< T >::computeMSE ( const Image< T > & anImage ) const

inherited

Definition at line 3678 of file Image.inl.

◆ computeNCC()

template<typename T>

double gVirtualXRay::Image< T >::computeNCC ( const Image< T > & anImage ) const

inherited

Definition at line 3694 of file Image.inl.

◆ computeRMSE()

template<typename T>

double gVirtualXRay::Image< T >::computeRMSE ( const Image< T > & anImage ) const

inherited

Definition at line 3686 of file Image.inl.

◆ computeSAE()

template<typename T>

double gVirtualXRay::Image< T >::computeSAE ( const Image< T > & anImage ) const

inherited

Definition at line 3620 of file Image.inl.

◆ computeSSE()

template<typename T>

double gVirtualXRay::Image< T >::computeSSE ( const Image< T > & anImage ) const

inherited

Definition at line 3651 of file Image.inl.

◆ constantPadFilter()

template<typename T>

Image< T > gVirtualXRay::Image< T >::constantPadFilter ( const T & aPadValue ) const

inherited

Definition at line 1927 of file Image.inl.

◆ convertHU2mu()

template<typename T>

Image<T> gVirtualXRay::Image< T >::convertHU2mu ( double anEnergy ) const

inherited

◆ convertVoxelsToCubes()

template<typename T>

void gVirtualXRay::Image< T >::convertVoxelsToCubes	(	std::map< T, PolygonMesh > &	aPolygonMeshSet,
		T	aThreshold = `-1000`,
		unsigned char	aVerboseLevel = `0`
	)		const

inherited

Convert every voxel into a cube.

Parameters

aPolygonMeshSet	the set of polygon mesh
aThreshold	the iso-value. Any voxel above the iso-value is part of the selected object. Other voxels are ignored.
aVerboseLevel	the level of statements in the standard output. For no output, use 0 (default value: 0)

◆ convolution1D()

template<typename T >

Image< T > gVirtualXRay::Image< T >::convolution1D ( const std::vector< float > & aKernel ) const

inherited

Definition at line 1360 of file Image.inl.

◆ convolution2D() [1/2]

template<typename T >

Image< T > gVirtualXRay::Image< T >::convolution2D ( const Image< float > & aKernel ) const

inherited

Definition at line 1396 of file Image.inl.

◆ convolution2D() [2/2]

template<typename T >

Image< T > gVirtualXRay::Image< T >::convolution2D ( const Image< double > & aKernel ) const

inherited

Definition at line 1442 of file Image.inl.

◆ destroy()

template<typename T >

void gVirtualXRay::Image< T >::destroy ( )

inherited

Release the memory.

Definition at line 694 of file Image.inl.

◆ destroyOpenGLTexture()

template<typename T >

void gVirtualXRay::Image< T >::destroyOpenGLTexture ( )

inherited

Definition at line 5046 of file Image.inl.

◆ filteredBackProjection() [1/2]

template<typename T>

Image< T > gVirtualXRay::Sinogram< T >::filteredBackProjection	(	double	aFirstAngle,
		double	anAngleStep,
		const char *	aFilterType = `"hamming"`,
		float	aScalingFactor = `1.0`,
		const char *	aDirectory = `0`,
		void()(const Image< T > , const Image< T > , const Image< T > )	aCallback = `0`
	)		const

Definition at line 458 of file Sinogram.inl.

◆ filteredBackProjection() [2/2]

template<typename T>

Image< T > gVirtualXRay::Sinogram< T >::filteredBackProjection	(	double	aFirstAngle,
		double	anAngleStep,
		const std::string &	aFilterType,
		float	aScalingFactor,
		const std::string &	aDirectory,
		void()(const Image< T > , const Image< T > , const Image< T > )	aCallback
	)		const

Definition at line 577 of file Sinogram.inl.

◆ flipHorizontally()

template<typename T >

Image< T > gVirtualXRay::Image< T >::flipHorizontally ( ) const

inherited

Definition at line 2071 of file Image.inl.

◆ flipVertically()

template<typename T >

Image< T > gVirtualXRay::Image< T >::flipVertically ( ) const

inherited

Definition at line 2039 of file Image.inl.

◆ getAverage()

template<typename T >

double gVirtualXRay::Image< T >::getAverage ( ) const

inherited

Definition at line 3585 of file Image.inl.

◆ getDepth()

template<typename T >

unsigned int gVirtualXRay::Image< T >::getDepth ( ) const

inherited

Number of pixels along the Z axis.

Returns: the depth

Definition at line 800 of file Image.inl.

◆ getFFT()

template<typename T >

FFT< T > gVirtualXRay::Image< T >::getFFT ( ) const

inherited

Definition at line 3721 of file Image.inl.

◆ getHeight()

template<typename T >

unsigned int gVirtualXRay::Image< T >::getHeight ( ) const

inherited

Number of pixels along the vertical axis.

Returns: the height

Definition at line 792 of file Image.inl.

◆ getIsoTropic()

template<typename T >

Image< float > gVirtualXRay::Image< T >::getIsoTropic ( ) const

inherited

Definition at line 1623 of file Image.inl.

◆ getMaxValue() [1/2]

template<typename T >

T gVirtualXRay::Image< T >::getMaxValue ( ) const

inherited

Compute the maximum pixel value in the image.

Returns: the maximum pixel

Definition at line 850 of file Image.inl.

◆ getMaxValue() [2/2]

template<typename T >

T gVirtualXRay::Image< T >::getMaxValue ( unsigned int aSliceID ) const

inherited

Compute the maximum pixel value in a given slice.

Parameters

aSliceID the slice ID

Returns: the maximum pixel

Definition at line 878 of file Image.inl.

◆ getMinValue() [1/2]

template<typename T >

T gVirtualXRay::Image< T >::getMinValue ( ) const

inherited

Compute the minimum pixel value in the image.

Returns: the minimum pixel

Definition at line 836 of file Image.inl.

◆ getMinValue() [2/2]

template<typename T >

T gVirtualXRay::Image< T >::getMinValue ( unsigned int aSliceID ) const

inherited

Compute the minimum pixel value in a given slice.

Parameters

aSliceID the slice ID

Returns: the minimum pixel

Definition at line 864 of file Image.inl.

◆ getPixel() [1/2]

template<typename T >

T & gVirtualXRay::Image< T >::getPixel	(	unsigned int	i,
		unsigned int	j,
		unsigned int	k = `0`
	)

inherited

Accessor on a pixel value.

Parameters

i	the position of the pixel along the x-axis
j	the position of the pixel along the y-axis
k	the position of the pixel along the z-axis (default value: 0)

Returns: the pixel value

Definition at line 582 of file Image.inl.

◆ getPixel() [2/2]

template<typename T >

const T & gVirtualXRay::Image< T >::getPixel	(	unsigned int	i,
		unsigned int	j,
		unsigned int	k = `0`
	)		const

inherited

Accessor on a pixel value.

Parameters

i	the position of the pixel along the x-axis
j	the position of the pixel along the y-axis
k	the position of the pixel along the z-axis (default value: 0)

Returns: the pixel value

Definition at line 600 of file Image.inl.

◆ getPixelPosition()

template<typename T >

VEC3 gVirtualXRay::Image< T >::getPixelPosition	(	unsigned int	i,
		unsigned int	j,
		unsigned int	k = `0`
	)		const

inherited

Accessor on a pixel position.

Parameters

i	the position of the pixel along the x-axis
j	the position of the pixel along the y-axis
k	the position of the pixel along the z-axis (default value: 0)

Returns: the pixel position

Definition at line 638 of file Image.inl.

◆ getPixelValue() [1/2]

template<typename T >

T & gVirtualXRay::Image< T >::getPixelValue	(	unsigned int	i,
		unsigned int	j,
		unsigned int	k = `0`
	)

inherited

Accessor on a pixel value.

Parameters

i	the position of the pixel along the x-axis
j	the position of the pixel along the y-axis
k	the position of the pixel along the z-axis (default value: 0)

Returns: the pixel value

Definition at line 618 of file Image.inl.

◆ getPixelValue() [2/2]

template<typename T >

const T & gVirtualXRay::Image< T >::getPixelValue	(	unsigned int	i,
		unsigned int	j,
		unsigned int	k = `0`
	)		const

inherited

Accessor on a pixel value.

Parameters

i	the position of the pixel along the x-axis
j	the position of the pixel along the y-axis
k	the position of the pixel along the z-axis (default value: 0)

Returns: the pixel value

Definition at line 628 of file Image.inl.

◆ getProjectionSet()

template<typename T >

Image< T > gVirtualXRay::Sinogram< T >::getProjectionSet ( ) const

Definition at line 97 of file Sinogram.inl.

◆ getRawData() [1/2]

template<typename T >

T * gVirtualXRay::Image< T >::getRawData ( )

inherited

Accessor on the raw data.

Returns: the raw data

Definition at line 717 of file Image.inl.

◆ getRawData() [2/2]

template<typename T >

const T * gVirtualXRay::Image< T >::getRawData ( ) const

inherited

Accessor on the raw data.

Returns: the raw data

Definition at line 725 of file Image.inl.

◆ getROI()

template<typename T >

Image< T > gVirtualXRay::Image< T >::getROI	(	unsigned int	i,
		unsigned int	j,
		unsigned int	k,
		unsigned int	aWidth,
		unsigned int	aHeight,
		unsigned int	aDepth
	)		const

inherited

Compute a region of interest (ROI).

Parameters

i	the position of the first pixel of the ROI along the horizontal axis
j	the position of the first pixel of the ROI along the vertical axis
k	the position of the first pixel of the ROI along the depth axis
aWidth	the width of the ROI (in number of pixels)
aHeight	the height of the ROI (in number of pixels)
aDepth	the depth of the ROI (in number of pixels)

Returns: the ROI

Definition at line 509 of file Image.inl.

◆ getSpacing()

template<typename T >

const VEC3 & gVirtualXRay::Image< T >::getSpacing ( ) const

inherited

Definition at line 828 of file Image.inl.

◆ getStandardDeviation()

template<typename T >

double gVirtualXRay::Image< T >::getStandardDeviation ( ) const

inherited

Definition at line 3612 of file Image.inl.

◆ getSum()

template<typename T >

double gVirtualXRay::Image< T >::getSum ( ) const

inherited

Definition at line 3569 of file Image.inl.

◆ getTextureId()

template<typename T >

unsigned int gVirtualXRay::Image< T >::getTextureId ( ) const

inherited

Definition at line 5058 of file Image.inl.

◆ getVariance()

template<typename T >

double gVirtualXRay::Image< T >::getVariance ( ) const

inherited

Definition at line 3593 of file Image.inl.

◆ getWidth()

template<typename T >

unsigned int gVirtualXRay::Image< T >::getWidth ( ) const

inherited

Number of pixels along the horizontal axis.

Returns: the width

Definition at line 784 of file Image.inl.

◆ load() [1/2]

template<typename T >

void gVirtualXRay::Image< T >::load ( const char * aFileName )

inherited

Definition at line 2155 of file Image.inl.

◆ load() [2/2]

template<typename T >

void gVirtualXRay::Image< T >::load ( const std::string & aFileName )

inherited

Definition at line 2214 of file Image.inl.

◆ loadASCII() [1/4]

template<typename T >

void gVirtualXRay::Image< T >::loadASCII ( const char * aFileName )

inherited

Definition at line 351 of file Image.inl.

◆ loadASCII() [2/4]

template<typename T >

void gVirtualXRay::Image< T >::loadASCII ( const std::string & aFileName )

inherited

Definition at line 419 of file Image.inl.

◆ loadASCII() [3/4]

template<typename T >

void gVirtualXRay::Image< T >::loadASCII	(	const char *	aFileName,
		unsigned int	aWidth,
		unsigned int	aHeight,
		unsigned int	aDepth,
		const VEC3 &	aVoxelSize
	)

inherited

Definition at line 427 of file Image.inl.

◆ loadASCII() [4/4]

template<typename T >

void gVirtualXRay::Image< T >::loadASCII	(	const std::string &	aFileName,
		unsigned int	aWidth,
		unsigned int	aHeight,
		unsigned int	aDepth,
		const VEC3 &	aVoxelSize
	)

inherited

Definition at line 494 of file Image.inl.

◆ loadDicomSeries() [1/2]

template<typename T >

void gVirtualXRay::Image< T >::loadDicomSeries ( const char * aDirectory )

inherited

Definition at line 2363 of file Image.inl.

◆ loadDicomSeries() [2/2]

template<typename T >

void gVirtualXRay::Image< T >::loadDicomSeries ( const std::string & aDirectory )

inherited

Definition at line 2423 of file Image.inl.

◆ loadMHA() [1/2]

template<typename T >

void gVirtualXRay::Image< T >::loadMHA ( const char * aFileName )

inherited

Definition at line 2539 of file Image.inl.

◆ loadMHA() [2/2]

template<typename T >

void gVirtualXRay::Image< T >::loadMHA ( const std::string & aFileName )

inherited

Definition at line 2531 of file Image.inl.

◆ loadMHD() [1/2]

template<typename T >

void gVirtualXRay::Image< T >::loadMHD ( const char * aFileName )

inherited

Definition at line 2522 of file Image.inl.

◆ loadMHD() [2/2]

template<typename T >

void gVirtualXRay::Image< T >::loadMHD ( const std::string & aFileName )

inherited

Definition at line 2514 of file Image.inl.

◆ loadRAW() [1/2]

template<typename T >

void gVirtualXRay::Image< T >::loadRAW	(	const char *	aFileName,
		unsigned int	aWidth,
		unsigned int	aHeight,
		unsigned int	aNumberOfSlices = `1`,
		bool	aChangeEndianessFlag = `false`,
		const char *	anElementType = `0`
	)

inherited

Definition at line 2548 of file Image.inl.

◆ loadRAW() [2/2]

template<typename T >

void gVirtualXRay::Image< T >::loadRAW	(	const std::string &	aFileName,
		unsigned int	aWidth,
		unsigned int	aHeight,
		unsigned int	aNumberOfSlices = `1`,
		bool	aChangeEndianessFlag = `false`,
		const std::string &	anElementType = `""`
	)

inherited

Definition at line 2573 of file Image.inl.

◆ loadSeries() [1/2]

template<typename T >

void gVirtualXRay::Image< T >::loadSeries	(	const char *	aPattern,
		int	aFirstSliceIndex,
		int	aLastSliceIndex,
		int	anIncrementIndex = `1`
	)

inherited

Definition at line 2285 of file Image.inl.

◆ loadSeries() [2/2]

template<typename T >

void gVirtualXRay::Image< T >::loadSeries	(	const std::string &	aPattern,
		int	aFirstSliceIndex,
		int	aLastSliceIndex,
		int	anIncrementIndex = `1`
	)

inherited

Definition at line 2352 of file Image.inl.

◆ loadUsingITK() [1/2]

template<typename T >

void gVirtualXRay::Image< T >::loadUsingITK ( const char * aFileName )

inherited

Definition at line 2222 of file Image.inl.

◆ loadUsingITK() [2/2]

template<typename T >

void gVirtualXRay::Image< T >::loadUsingITK ( const std::string & aFileName )

inherited

Definition at line 2277 of file Image.inl.

◆ log()

template<typename T >

Image< T > gVirtualXRay::Image< T >::log ( ) const

inherited

Definition at line 2122 of file Image.inl.

◆ makeBlank()

template<typename T>

void gVirtualXRay::Image< T >::makeBlank ( const T & aDefaultColour = 0 )

inherited

Replace all the pixels of an image with a default value.

Parameters

aDefaultColour the pixel value (default value: 0)

Definition at line 343 of file Image.inl.

◆ marchingCubes()

template<typename T>

PolygonMesh gVirtualXRay::Image< T >::marchingCubes	(	const T &	aFirstThresholdValue,
		const T &	aSecondThresholdValue = `0`,
		bool	aTwoThresholdFlag = `false`,
		unsigned char	aVerboseLevel = `0`
	)		const

inherited

Apply the marching cubes algorithm to extract the polygon mesh corresponding to voxel values in the range between aFirstThresholdValue and aSecondThresholdValue.

Parameters

aFirstThresholdValue	the first threshold
aSecondThresholdValue	the second threshold (optional)
aTwoThresholdFlag	if the flag is false, then use aFirstThresholdValue as iso-value. If the flag is true, then use voxel values in the range between aFirstThresholdValue and aSecondThresholdValue. (default value: false)
aVerboseLevel	the level of statements in the standard output. For no output, use 0 (default value: 0)

Returns: the polygon mesh

Definition at line 4496 of file Image.inl.

◆ mart() [1/2]

template<typename T>

Image< T > gVirtualXRay::Sinogram< T >::mart	(	double	aFirstAngle,
		double	anAngleStep,
		unsigned int	aNumberOfIterations = `0`,
		const char *	aDirectory = `0`,
		void()(const Image< T > , const Image< T > , const Image< T > )	aCallback = `0`
	)		const

Definition at line 216 of file Sinogram.inl.

◆ mart() [2/2]

template<typename T>

Image< T > gVirtualXRay::Sinogram< T >::mart	(	double	aFirstAngle,
		double	anAngleStep,
		unsigned int	aNumberOfIterations,
		const std::string &	aDirectory,
		void()(const Image< T > , const Image< T > , const Image< T > )	aCallback
	)		const

Definition at line 531 of file Sinogram.inl.

◆ normalised()

template<typename T >

Image< T > gVirtualXRay::Image< T >::normalised ( ) const

inherited

Normalise the image between 0 and 1.

Definition at line 2023 of file Image.inl.

◆ normalized()

template<typename T >

Image< T > gVirtualXRay::Image< T >::normalized ( ) const

inherited

Normalize the image between 0 and 1.

Definition at line 2031 of file Image.inl.

◆ opening()

template<typename T >

Image< unsigned char > gVirtualXRay::Image< T >::opening ( unsigned int aRadius ) const

inherited

Definition at line 1487 of file Image.inl.

◆ operator!()

template<typename T >

Image< T > gVirtualXRay::Image< T >::operator! ( ) const

inherited

Negation operator. Compute the negative of the current image.

Returns: the negative image

Definition at line 4165 of file Image.inl.

◆ operator!=()

template<typename T>

bool gVirtualXRay::Image< T >::operator!= ( const Image< T > & anImage ) const

inherited

Operator Not equal to.

Parameters

anImage the image to compare with

Returns: true if the images are different, false if they are similar

Definition at line 3561 of file Image.inl.

◆ operator()() [1/2]

template<typename T >

T & gVirtualXRay::Image< T >::operator()	(	unsigned int	i,
		unsigned int	j,
		unsigned int	k
	)

inherited

Definition at line 674 of file Image.inl.

◆ operator()() [2/2]

template<typename T >

const T & gVirtualXRay::Image< T >::operator()	(	unsigned int	i,
		unsigned int	j,
		unsigned int	k
	)		const

inherited

Definition at line 684 of file Image.inl.

◆ operator*() [1/2]

template<typename T>

Image< T > gVirtualXRay::Image< T >::operator* ( const Image< T > & anImage ) const

inherited

Multiplication operator. Add anImage.

Parameters

anImage the image to add

Returns: the resulting image

Definition at line 3875 of file Image.inl.

◆ operator*() [2/2]

template<typename T>

Image< T > gVirtualXRay::Image< T >::operator* ( T aValue ) const

inherited

Multiplication operator. Multiply every pixel of the image by aValue.

Parameters

aValue the value for the multiplication

Returns: the resulting image

Definition at line 4043 of file Image.inl.

◆ operator*=() [1/2]

template<typename T>

Image< T > & gVirtualXRay::Image< T >::operator*= ( const Image< T > & anImage )

inherited

Multiplication assignment operator. Add anImage.

Parameters

anImage the image to add

Returns: the updated version of the current image

Definition at line 3977 of file Image.inl.

◆ operator*=() [2/2]

template<typename T>

Image< T > & gVirtualXRay::Image< T >::operator*= ( T aValue )

inherited

Multiplication operator. Multiply every pixel of the image by aValue.

Parameters

aValue the value for the multiplication

Returns: the updated version of the current image

Definition at line 4125 of file Image.inl.

◆ operator+() [1/2]

template<typename T>

Image< T > gVirtualXRay::Image< T >::operator+ ( const Image< T > & anImage ) const

inherited

Addition operator. Add anImage.

Parameters

anImage the image to add

Returns: the resulting image

Definition at line 3801 of file Image.inl.

◆ operator+() [2/2]

template<typename T>

Image< T > gVirtualXRay::Image< T >::operator+ ( T aValue ) const

inherited

Addition operator. Add aValue to every pixel of the image.

Parameters

aValue the value to add

Returns: the resulting image

Definition at line 4001 of file Image.inl.

◆ operator+=() [1/2]

template<typename T>

Image< T > & gVirtualXRay::Image< T >::operator+= ( const Image< T > & anImage )

inherited

Addition assignment operator. Add anImage.

Parameters

anImage the image to add

Returns: the updated version of the current image

Definition at line 3953 of file Image.inl.

◆ operator+=() [2/2]

template<typename T>

Image< T > & gVirtualXRay::Image< T >::operator+= ( T aValue )

inherited

Addition operator. Add aValue to every pixel of the image.

Parameters

aValue the value to add

Returns: the updated version of the current image

Definition at line 4091 of file Image.inl.

◆ operator-() [1/2]

template<typename T>

Image< T > gVirtualXRay::Image< T >::operator- ( const Image< T > & anImage ) const

inherited

Subtraction operator. Add anImage.

Parameters

anImage the image to subtract

Returns: the resulting image

Definition at line 3838 of file Image.inl.

◆ operator-() [2/2]

template<typename T>

Image< T > gVirtualXRay::Image< T >::operator- ( T aValue ) const

inherited

Subtraction operator. Subtract aValue to every pixel of the image.

Parameters

aValue the value to subtract

Returns: the resulting image

Definition at line 4022 of file Image.inl.

◆ operator-=() [1/2]

template<typename T>

Image< T > & gVirtualXRay::Image< T >::operator-= ( const Image< T > & anImage )

inherited

Subraction assignment operator. Add anImage.

Parameters

anImage the image to subtract

Returns: the updated version of the current image

Definition at line 3965 of file Image.inl.

◆ operator-=() [2/2]

template<typename T>

Image< T > & gVirtualXRay::Image< T >::operator-= ( T aValue )

inherited

Subtraction operator. Subtract aValue to every pixel of the image.

Parameters

aValue the value to subtract

Returns: the updated version of the current image

Definition at line 4108 of file Image.inl.

◆ operator/() [1/2]

template<typename T>

Image< T > gVirtualXRay::Image< T >::operator/ ( const Image< T > & anImage ) const

inherited

Division operator. Add anImage.

Parameters

anImage the image to subtract

Returns: the resulting image

Definition at line 3912 of file Image.inl.

◆ operator/() [2/2]

template<typename T>

Image< T > gVirtualXRay::Image< T >::operator/ ( T aValue ) const

inherited

Division operator. Divide every pixel of the image by aValue.

Parameters

aValue the value for the division

Returns: the resulting image

Definition at line 4064 of file Image.inl.

◆ operator/=() [1/2]

template<typename T>

Image< T > & gVirtualXRay::Image< T >::operator/= ( const Image< T > & anImage )

inherited

Division assignment operator. Add anImage.

Parameters

anImage the image to subtract

Returns: the updated version of the current image

Definition at line 3989 of file Image.inl.

◆ operator/=() [2/2]

template<typename T>

Image< T > & gVirtualXRay::Image< T >::operator/= ( T aValue )

inherited

Division operator. Divide every pixel of the image by aValue.

Parameters

aValue the value for the division

Returns: the updated version of the current image

Definition at line 4142 of file Image.inl.

◆ operator==()

template<typename T>

bool gVirtualXRay::Image< T >::operator== ( const Image< T > & anImage ) const

inherited

Operator Equal to.

Parameters

anImage the image to compare with

Returns: true if the images are similar, false if they are different

Definition at line 3528 of file Image.inl.

◆ operator[]() [1/2]

template<typename T >

T & gVirtualXRay::Image< T >::operator[] ( unsigned anIndex )

inherited

Definition at line 648 of file Image.inl.

◆ operator[]() [2/2]

template<typename T >

const T & gVirtualXRay::Image< T >::operator[] ( unsigned anIndex ) const

inherited

Definition at line 661 of file Image.inl.

◆ radonTransform()

template<typename T >

Sinogram< T > gVirtualXRay::Image< T >::radonTransform	(	double	aFirstAngle,
		double	anAngleStep,
		double	aLastAngle
	)		const

inherited

Definition at line 4422 of file Image.inl.

◆ resize()

template<typename T >

Image< T > gVirtualXRay::Image< T >::resize	(	unsigned int	aNewWidth,
		unsigned int	aNewHeightunsigned,
		unsigned int	aNewNumberOfSlices
	)		const

inherited

Definition at line 4234 of file Image.inl.

◆ rotate()

template<typename T >

Image< T > gVirtualXRay::Image< T >::rotate ( float anAngleInDegrees ) const

inherited

Definition at line 4347 of file Image.inl.

◆ save() [1/2]

template<typename T >

void gVirtualXRay::Image< T >::save	(	const char *	aFileName,
		bool	anInvertLUTFlag = `false`,
		const char *	aComment = `""`,
		bool	useDeflateCompressionIfPossible = `false`
	)		const

inherited

Save the image in a file.

Parameters

aFileName	the name of the file to write
anInvertLUTFlag	invert the LUT if it is supported by the file format (default value: false)
aComment	add a comment if it is supported by the file format (default value: "")
useDeflateCompressionIfPossible	use compression if possible (default value: false)

Definition at line 2432 of file Image.inl.

◆ save() [2/2]

template<typename T >

void gVirtualXRay::Image< T >::save	(	const std::string &	aFileName,
		bool	anInvertLUTFlag = `false`,
		const std::string &	aComment = `""`,
		bool	useDeflateCompressionIfPossible = `false`
	)		const

inherited

Save the image in a file.

Parameters

aFileName	the name of the file to write
anInvertLUTFlag	invert the LUT if it is supported by the file format (default value: false)
aComment	add a comment if it is supported by the file format (default value: "")
useDeflateCompressionIfPossible	use compression if possible (default value: false)

Definition at line 2586 of file Image.inl.

◆ saveASCII() [1/2]

template<typename T >

void gVirtualXRay::Image< T >::saveASCII ( const char * aFileName ) const

inherited

Save the image in an ASCII file.

Parameters

aFileName the name of the file to write

Definition at line 2805 of file Image.inl.

◆ saveASCII() [2/2]

template<typename T >

void gVirtualXRay::Image< T >::saveASCII ( const std::string & aFileName ) const

inherited

Save the image in an ASCII file.

Parameters

aFileName the name of the file to write

Definition at line 2849 of file Image.inl.

◆ saveDCM() [1/2]

template<typename T >

void gVirtualXRay::Image< T >::saveDCM	(	const char *	aFileName,
		bool	anInvertLUTFlag = `false`,
		const char *	aComment = `""`
	)		const

inherited

Save the image in a DICOM file.

Parameters

aFileName	the name of the file to write
anInvertLUTFlag	invert the LUT (default value: false)
aComment	add a comment (default value: "")

Definition at line 2884 of file Image.inl.

◆ saveDCM() [2/2]

template<typename T >

void gVirtualXRay::Image< T >::saveDCM	(	const std::string &	aFileName,
		bool	anInvertLUTFlag = `false`,
		const std::string &	aComment = `""`
	)		const

inherited

Save the image in a DICOM file.

Parameters

aFileName	the name of the file to write
anInvertLUTFlag	invert the LUT (default value: false)
aComment	add a comment (default value: "")

Definition at line 3054 of file Image.inl.

◆ saveMHA() [1/2]

template<typename T >

void gVirtualXRay::Image< T >::saveMHA	(	const char *	aFileName,
		bool	useDeflateCompressionIfPossible = `false`
	)		const

inherited

Save the image in a MHA+RAW file.

Parameters

aFileName	the name of the file to write
useDeflateCompressionIfPossible	use compression (default value: false)

Definition at line 2871 of file Image.inl.

◆ saveMHA() [2/2]

template<typename T >

void gVirtualXRay::Image< T >::saveMHA	(	const std::string &	aFileName,
		bool	useDeflateCompressionIfPossible = `false`
	)		const

inherited

Save the image in a MHA+RAW file.

Parameters

aFileName	the name of the file to write
useDeflateCompressionIfPossible	use compression (default value: false)

Definition at line 2877 of file Image.inl.

◆ saveMHD() [1/2]

template<typename T >

void gVirtualXRay::Image< T >::saveMHD	(	const char *	aFileName,
		bool	useDeflateCompressionIfPossible = `false`
	)		const

inherited

Save the image in a MHD+RAW file.

Parameters

aFileName	the name of the file to write
useDeflateCompressionIfPossible	use compression (default value: false)

Definition at line 2857 of file Image.inl.

◆ saveMHD() [2/2]

template<typename T >

void gVirtualXRay::Image< T >::saveMHD	(	const std::string &	aFileName,
		bool	useDeflateCompressionIfPossible = `false`
	)		const

inherited

Save the image in a MHD+RAW file.

Parameters

aFileName	the name of the file to write
useDeflateCompressionIfPossible	use compression (default value: false)

Definition at line 2865 of file Image.inl.

◆ savePGM() [1/2]

template<typename T >

void gVirtualXRay::Image< T >::savePGM ( const char * aFileName ) const

inherited

Save the image in a PGM file.

Parameters

aFileName the name of the file to write

Definition at line 2597 of file Image.inl.

◆ savePGM() [2/2]

template<typename T >

void gVirtualXRay::Image< T >::savePGM ( const std::string & aFileName ) const

inherited

Save the image in a PGM file.

Parameters

aFileName the name of the file to write

Definition at line 2676 of file Image.inl.

◆ saveRaw() [1/2]

template<typename T >

void gVirtualXRay::Image< T >::saveRaw	(	const char *	aFileName,
		bool	useDeflateCompressionIfPossible
	)		const

inherited

Save the image in a Raw file.

Parameters

aFileName	the name of the file to write
useDeflateCompressionIfPossible	use compression (default value: false)

Definition at line 2684 of file Image.inl.

◆ saveRaw() [2/2]

template<typename T >

void gVirtualXRay::Image< T >::saveRaw	(	const std::string &	aFileName,
		bool	useDeflateCompressionIfPossible
	)		const

inherited

Save the image in a Raw file.

Parameters

aFileName	the name of the file to write
useDeflateCompressionIfPossible	use compression (default value: false)

Definition at line 2788 of file Image.inl.

◆ saveRAW() [1/2]

template<typename T >

void gVirtualXRay::Image< T >::saveRAW	(	const char *	aFileName,
		bool	useDeflateCompressionIfPossible
	)		const

inherited

Save the image in a Raw file.

Parameters

aFileName	the name of the file to write
useDeflateCompressionIfPossible	use compression (default value: false)

Definition at line 2780 of file Image.inl.

◆ saveRAW() [2/2]

template<typename T >

void gVirtualXRay::Image< T >::saveRAW	(	const std::string &	aFileName,
		bool	useDeflateCompressionIfPossible
	)		const

inherited

Save the image in a Raw file.

Parameters

aFileName	the name of the file to write
useDeflateCompressionIfPossible	use compression (default value: false)

Definition at line 2797 of file Image.inl.

◆ saveTIFF() [1/2]

template<typename T >

void gVirtualXRay::Image< T >::saveTIFF	(	const char *	aFileName,
		bool	anInvertLUTFlag = `false`
	)		const

inherited

Save the image in a TIFF file.

Parameters

aFileName	the name of the file to write
anInvertLUTFlag	invert the LUT (default value: false)

Definition at line 3064 of file Image.inl.

◆ saveTIFF() [2/2]

template<typename T >

void gVirtualXRay::Image< T >::saveTIFF	(	const std::string &	aFileName,
		bool	anInvertLUTFlag = `false`
	)		const

inherited

Save the image in a TIFF file.

Parameters

aFileName	the name of the file to write
anInvertLUTFlag	invert the LUT (default value: false)

Definition at line 3367 of file Image.inl.

◆ saveUsingITK() [1/2]

template<typename T >

void gVirtualXRay::Image< T >::saveUsingITK	(	const char *	aFileName,
		bool	useDeflateCompressionIfPossible = `false`
	)		const

inherited

Save the image in a file using ITK.

Parameters

aFileName	the name of the file to write
useDeflateCompressionIfPossible	use compression (default value: false)

Definition at line 3376 of file Image.inl.

◆ saveUsingITK() [2/2]

template<typename T >

void gVirtualXRay::Image< T >::saveUsingITK	(	const std::string &	aFileName,
		bool	useDeflateCompressionIfPossible = `false`
	)		const

inherited

Save the image in a file using ITK.

Parameters

aFileName	the name of the file to write
useDeflateCompressionIfPossible	use compression (default value: false)

Definition at line 3519 of file Image.inl.

◆ setCanvasSize()

template<typename T >

Image< T > gVirtualXRay::Image< T >::setCanvasSize	(	unsigned int	aNewWidth,
		unsigned int	aNewHeight,
		unsigned int	aNewNumberOfSlices
	)		const

inherited

Definition at line 4194 of file Image.inl.

◆ setPixel()

template<typename T>

void gVirtualXRay::Image< T >::setPixel	(	unsigned int	i,
		unsigned int	j,
		unsigned int	k,
		T	aValue
	)

inherited

Set a pixel.

Parameters

i	the position of the pixel along the x-axis
j	the position of the pixel along the y-axis
k	the position of the pixel along the z-axis
aValue	the new pixel value

Definition at line 563 of file Image.inl.

◆ setSpacing() [1/2]

template<typename T >

void gVirtualXRay::Image< T >::setSpacing ( const VEC3 & aPixelSize )

inherited

Definition at line 808 of file Image.inl.

◆ setSpacing() [2/2]

template<typename T >

void gVirtualXRay::Image< T >::setSpacing	(	const double &	aPixelWidth,
		const double &	aPixelHeight = `0.0`,
		const double &	aPixelDepth = `0.0`
	)

inherited

Definition at line 816 of file Image.inl.

◆ shiftScaleFilter()

template<typename T >

Image< T > gVirtualXRay::Image< T >::shiftScaleFilter	(	double	aShiftValue,
		double	aScaleValue,
		bool	aRunOnGPUFlag = `true`
	)		const

inherited

Add aShiftValue to every pixel, then multiply every pixel by aScaleValue

Parameters

aShiftValue	the shift parameter of the filter
aScaleValue	the scale parameter of the filter

Definition at line 892 of file Image.inl.

◆ simpleBackProjection() [1/2]

template<typename T>

Image< T > gVirtualXRay::Sinogram< T >::simpleBackProjection	(	double	aFirstAngle,
		double	anAngleStep,
		const char *	aDirectorye = `0`,
		void()(const Image< T > , const Image< T > , const Image< T > )	aCallback = `0`
	)		const

Definition at line 395 of file Sinogram.inl.

◆ simpleBackProjection() [2/2]

template<typename T>

Image< T > gVirtualXRay::Sinogram< T >::simpleBackProjection	(	double	aFirstAngle,
		double	anAngleStep,
		const std::string &	aDirectory,
		void()(const Image< T > , const Image< T > , const Image< T > )	aCallback
	)		const

Definition at line 563 of file Sinogram.inl.

◆ sirt() [1/2]

template<typename T>

Image< T > gVirtualXRay::Sinogram< T >::sirt	(	double	aFirstAngle,
		double	anAngleStep,
		unsigned int	aNumberOfIterations = `0`,
		const char *	aDirectory = `0`,
		void()(const Image< T > , const Image< T > , const Image< T > )	aCallback = `0`
	)		const

Definition at line 309 of file Sinogram.inl.

◆ sirt() [2/2]

template<typename T>

Image< T > gVirtualXRay::Sinogram< T >::sirt	(	double	aFirstAngle,
		double	anAngleStep,
		unsigned int	aNumberOfIterations,
		const std::string &	aDirectory,
		void()(const Image< T > , const Image< T > , const Image< T > )	aCallback
	)		const

Definition at line 547 of file Sinogram.inl.

◆ sizeOf() [1/2]

template<typename T >

unsigned int gVirtualXRay::Image< T >::sizeOf ( const char * anElementType ) const

inherited

Definition at line 5469 of file Image.inl.

◆ sizeOf() [2/2]

template<typename T >

unsigned int gVirtualXRay::Image< T >::sizeOf ( const std::string & anElementType ) const

inherited

Definition at line 5475 of file Image.inl.

◆ threshold() [1/3]

template<typename T>

Image< unsigned char > gVirtualXRay::Image< T >::threshold	(	const T &	aLowerThreshold,
		const T &	aUpperThreshold,
		unsigned char	anInValue,
		unsigned char	anOutValue,
		bool	aRunOnGPUFlag = `true`
	)		const

inherited

Definition at line 1199 of file Image.inl.

◆ threshold() [2/3]

template<typename T>

Image< unsigned char > gVirtualXRay::Image< T >::threshold	(	const T &	aThreshold,
		unsigned char	aValueIn = `1`,
		unsigned char	aValueOut = `0`
	)		const

inherited

Definition at line 1955 of file Image.inl.

◆ threshold() [3/3]

template<typename T>

Image<unsigned char> gVirtualXRay::Image< T >::threshold	(	const T &	aLowerThreshold,
		const T &	aUpperThreshold,
		unsigned char	aValueIn = `1`,
		unsigned char	aValueOut = `0`
	)		const

inherited

◆ transferDeviceToHost()

template<typename T >

void gVirtualXRay::Image< T >::transferDeviceToHost ( )

inherited

Definition at line 1151 of file Image.inl.

◆ transferHostToDevice()

template<typename T >

void gVirtualXRay::Image< T >::transferHostToDevice ( )

inherited

Definition at line 1028 of file Image.inl.

◆ transpose()

template<typename T >

Image< T > gVirtualXRay::Image< T >::transpose ( ) const

inherited

Definition at line 3727 of file Image.inl.

◆ VertexInterp()

template<typename T>

VEC3 gVirtualXRay::Image< T >::VertexInterp	(	const T &	aThresholdValue,
		const VEC3 &	p0,
		const VEC3 &	p1,
		const T &	v0,
		const T &	v1
	)		const

protectedinherited

Definition at line 5185 of file Image.inl.

Field Documentation

◆ g_mesh_type

template<typename T>

unsigned int gVirtualXRay::Image< T >::g_mesh_type

staticprotectedinherited

Definition at line 1169 of file Image.h.

◆ g_vbo_type

template<typename T>

unsigned int gVirtualXRay::Image< T >::g_vbo_type

staticprotectedinherited

Definition at line 1172 of file Image.h.

◆ m_height

template<typename T>

unsigned int gVirtualXRay::Image< T >::m_height

protectedinherited

Number of pixel along the vertical axis.

Definition at line 1150 of file Image.h.

◆ m_number_of_slices

template<typename T>

unsigned int gVirtualXRay::Image< T >::m_number_of_slices

protectedinherited

Number of slices.

Definition at line 1154 of file Image.h.

◆ m_p_image

template<typename T>

T* gVirtualXRay::Image< T >::m_p_image

protectedinherited

The pixel data.

Definition at line 1162 of file Image.h.

◆ m_spacing

template<typename T>

VEC3 gVirtualXRay::Image< T >::m_spacing

protectedinherited

The space between two successive pixels.

Definition at line 1158 of file Image.h.

◆ m_texture_id

template<typename T>

unsigned int gVirtualXRay::Image< T >::m_texture_id

protectedinherited

OpenGL texture ID.

Definition at line 1166 of file Image.h.

◆ m_width

template<typename T>

unsigned int gVirtualXRay::Image< T >::m_width

protectedinherited

Number of pixel along the horizontal axis.

Definition at line 1146 of file Image.h.

The documentation for this class was generated from the following files:

/home/fpvidal/PROGRAMMING/RELEASE/gVirtualXray-2.0.10-Source/gvxr/include/gVirtualXRay/Image.h
/home/fpvidal/PROGRAMMING/RELEASE/gVirtualXray-2.0.10-Source/gvxr/include/gVirtualXRay/Sinogram.h
/home/fpvidal/PROGRAMMING/RELEASE/gVirtualXray-2.0.10-Source/gvxr/include/gVirtualXRay/Sinogram.inl

Public Member Functions

Protected Member Functions

Protected Attributes

Static Protected Attributes

Detailed Description

template<typename T> class gVirtualXRay::Sinogram< T >

Constructor & Destructor Documentation

◆ Sinogram() [1/3]

◆ Sinogram() [2/3]

◆ Sinogram() [3/3]

Member Function Documentation

◆ abs()

◆ allocateHostMemory()

◆ antiAliasBinaryImageFilter()

◆ art() [1/2]

◆ art() [2/2]

◆ closing()

◆ computeMAE()

◆ computeMSE()

◆ computeNCC()

◆ computeRMSE()

◆ computeSAE()

◆ computeSSE()

◆ constantPadFilter()

◆ convertHU2mu()

◆ convertVoxelsToCubes()

◆ convolution1D()

◆ convolution2D() [1/2]

◆ convolution2D() [2/2]

◆ destroy()

◆ destroyOpenGLTexture()

◆ filteredBackProjection() [1/2]

◆ filteredBackProjection() [2/2]

◆ flipHorizontally()

◆ flipVertically()

◆ getAverage()

◆ getDepth()

◆ getFFT()

◆ getHeight()

◆ getIsoTropic()

◆ getMaxValue() [1/2]

◆ getMaxValue() [2/2]

◆ getMinValue() [1/2]

◆ getMinValue() [2/2]

◆ getPixel() [1/2]

◆ getPixel() [2/2]

◆ getPixelPosition()

◆ getPixelValue() [1/2]

◆ getPixelValue() [2/2]

◆ getProjectionSet()

◆ getRawData() [1/2]

◆ getRawData() [2/2]

◆ getROI()

◆ getSpacing()

◆ getStandardDeviation()

◆ getSum()

◆ getTextureId()

◆ getVariance()

◆ getWidth()

◆ load() [1/2]

◆ load() [2/2]

◆ loadASCII() [1/4]

◆ loadASCII() [2/4]

◆ loadASCII() [3/4]

◆ loadASCII() [4/4]

◆ loadDicomSeries() [1/2]

◆ loadDicomSeries() [2/2]

◆ loadMHA() [1/2]

◆ loadMHA() [2/2]

◆ loadMHD() [1/2]

◆ loadMHD() [2/2]

◆ loadRAW() [1/2]

◆ loadRAW() [2/2]

◆ loadSeries() [1/2]

◆ loadSeries() [2/2]

◆ loadUsingITK() [1/2]

◆ loadUsingITK() [2/2]

◆ log()

◆ makeBlank()

◆ marchingCubes()

template<typename T>
class gVirtualXRay::Sinogram< T >